PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00100395001
Common NameGSBRNA2T00100395001, LOC106350560
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-X1
Protein Properties Length: 1120aa    MW: 122001 Da    PI: 8.0647
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00100395001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.89.9e-08322340119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+k+CH GpC+pC+
  GSBRNA2T00100395001 322 CGRHQCEKTCHVGPCDPCQ 340
                          ******************6 PP

2zf-NF-X118.16e-06386403118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C++ CH+GpC+ C
  GSBRNA2T00100395001 386 CGNHFCSEVCHPGPCGDC 403
                          ****************99 PP

3zf-NF-X126.81.1e-08445462118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG H+C++lCH G+CppC
  GSBRNA2T00100395001 445 CGLHTCNELCHSGDCPPC 462
                          ****************** PP

4zf-NF-X118.64.1e-06543561119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C++lCH G CppC 
  GSBRNA2T00100395001 543 CGQHSCESLCHSGHCPPCL 561
                          ******************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578509.0E-6141213No hitNo description
PROSITE profilePS500168.858150211IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.509153209IPR001841Zinc finger, RING-type
PROSITE patternPS013590153208IPR019786Zinc finger, PHD-type, conserved site
CDDcd060087.12E-6242305No hitNo description
SMARTSM004380.21267285IPR000967Zinc finger, NF-X1-type
PfamPF014228.1269284IPR000967Zinc finger, NF-X1-type
CDDcd060081.15E-12312360No hitNo description
SMARTSM004386.4E-5322341IPR000967Zinc finger, NF-X1-type
PfamPF014229.3E-6322339IPR000967Zinc finger, NF-X1-type
CDDcd060083.70E-9376421No hitNo description
SMARTSM004382.6E-5386405IPR000967Zinc finger, NF-X1-type
PfamPF014227.2E-5386403IPR000967Zinc finger, NF-X1-type
CDDcd060085.16E-14435482No hitNo description
SMARTSM004382.3E-6445464IPR000967Zinc finger, NF-X1-type
PfamPF014224.5E-7445462IPR000967Zinc finger, NF-X1-type
SMARTSM0043877504535IPR000967Zinc finger, NF-X1-type
PfamPF0142218504515IPR000967Zinc finger, NF-X1-type
CDDcd060085.83E-10533585No hitNo description
SMARTSM004382.0E-4543562IPR000967Zinc finger, NF-X1-type
PfamPF014221.0E-4543560IPR000967Zinc finger, NF-X1-type
CDDcd060081.26E-6590637No hitNo description
SMARTSM004380.079600618IPR000967Zinc finger, NF-X1-type
PfamPF0142222600617IPR000967Zinc finger, NF-X1-type
SMARTSM004380.015653683IPR000967Zinc finger, NF-X1-type
PfamPF014220.017653668IPR000967Zinc finger, NF-X1-type
CDDcd060088.30E-5681730No hitNo description
SMARTSM004380.017692713IPR000967Zinc finger, NF-X1-type
PfamPF014220.46693711IPR000967Zinc finger, NF-X1-type
PfamPF014241.9E-4825889IPR001374R3H domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1120 aa     Download sequence    Send to blast
MSSQVRRDRR HQSSQQTWVP RGASTPVAVV NEPSHPSANN TAGVSETVGL GAASRPVYPQ  60
RQHNGSVRPS YNQHQRNNNV AATPPPPNRQ RRNNIAPGAT LPDDNRQRVG SRTRPVYQGK  120
RVAKEDNIAL TDPNLPQLVQ EIQEKLVKSS IECMICYDKV GRAANIWSCS SCYSIFHMHC  180
IKKWARAPTS IDLLAEKNQG DNWRCPGCQS VQLTSPKEIC YRCFCGKRKD PPSDPYLTPH  240
SCGEPCGKPL EKEFAAAAET TTSEDLCPHI CVLQCHPGPC PPCKAFAPPR SCPCGKKTVH  300
TRCSERRSLL VCGQRCEKLL NCGRHQCEKT CHVGPCDPCQ VLVNATCFCK KKVETVICGD  360
MNVKGELKVE DGVYSCNLNC GKPLGCGNHF CSEVCHPGPC GDCDLLPSRV KTCYCGKTRL  420
EEQTRQSCLD PIPSCSNLCS KLLPCGLHTC NELCHSGDCP PCLVQVNQKC RCGSTSRTVE  480
CYITTSSETD KFVCSKPCGR KKNCGRHRCS ERCCPLLNAK KNDLSGDWDE HVCQLPCGKK  540
LRCGQHSCES LCHSGHCPPC LEMIFTDLTC ACGNTSIPPP LPCGTPVPSC QLPCSIPQPC  600
GHSATHGCHF GDCPPCSAPV EKKCVGGHVV LRNIPCGLKD IRCNKICGKT RRCGMHACAR  660
TCHPEACDTY NESEAALRVT CGQTCSAPRR DCRHTCAALC HPSQPCPDTR CEFPVTITCS  720
CGRITATVPC DAGGGSTSNL SVDSIYEASV LQKLPTSLQP VESNGSRIPL GQRKLSCDDE  780
CAKLERKRVL QDAFDITPPN LDSLHFSENA AMTEIISDIY RRDPKWVLAV EERFKYLVLG  840
KARGSTSTLK VHVFCPMQKD KRDTVRLLAE RWKLAVSNAG WEPKRFTVVH VTQKSKPPTR  900
IIGARGGAVS LGGPHPPSFD PLVDMDPRLV VSLLDLPREA NISALVLRFG GECELVWLND  960
KNALAVFHDH ARAATAMRRL DHGSVYHGAV VVQNGQQSPS LGGNAWGKLP SSSSWDVQKA  1020
NPWKKAVIQE SDENWGAEDS PIGGSSTDIQ AAAWRSATSN NPVVTSVNRW SVLEPETPNT  1080
SGLQPLVRTE GSSSSKAAGK QPVEGSSEEV VDDWEKVCE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.166120.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00100395001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013645885.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1-like isoform X1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A078E2U60.0A0A078E2U6_BRANA; BnaC05g07520D protein
STRINGBra019958.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]